Development and characterization of novel microsatellite loci for an endangered hammerhead shark Sphyrna lewini by using shotgun sequencing

Shan-Hui Su, Shang-Yin Vanson Liu, Kwang-Ming Liu, Wen-Pei Tsai

Published on: 20 April 2020

DOI: 10.6165/tai.2020.65.261

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2020 vol.65 no.2 pp.261-263



Bankevich, A., S. Nurk, D. Antipov, A. A. Gurevich, M. Dvorkin, A. S. Kulikov, V.M. Lesin, S.I. Nikolenko, S. Pham, A.D. Prjibelski, A.V. Pyshkin, A.V. Sirotkin, N. Vyahhi, G. Tesler, M.A. Alekseyev and A. V. Pyshkin. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19(5): 455–477.
DOI: 10.1089/cmb.2012.0021View ArticleGoogle Scholar

Baum, J., S. Clarke, A. Domingo, M. Ducrocq, A. F. Lam?naca, N. Gaibor, R. Graham, S. Jorgensen, J.E. Kotas, E. Medina, J. Martinez-Ortiz, J. Monzini Taccone di Sitizano, M.R. Morales, S.S. Navarro, J.C. P?rez-Jim?nez, C. Ruiz, W. Smith, S.V. Valenti and C. M. Vooren. 2009. Sphyrna lewini. The IUCN Red List of Threatened Species. 2009.

Bessudo, S., G. A. Soler, P.A. Klimley, J. Ketchum, R. Arauz, A. Hearn, A. Guzm?n and B. Calmettes. 2011. Vertical and horizontal movements of the scalloped hammerhead shark (Sphyrna lewini) around Malpelo and Cocos Islands (Tropical East Pacific) using satellite telemetry. Bol. Invest. Mar. Cost. 40: 91–106.
DOI: 10.25268/bimc.invemar.2011.40.0.133View ArticleGoogle Scholar

Carde?osa, D., A.T. Fields, E.A. Babcock, H. Zhang, K. Feldheim, S.K.H. Shea, G.A. Fischer and D.D. Chapman. 2018. CITES?listed sharks remain among the top species in the contemporary fin trade. Conserv. Lett. 11(4): e12457.
DOI: 10.1111/conl.12457View ArticleGoogle Scholar

Chen, C.T., T.C. Leu and S.J. Joung. 1988. Note on reproduction in the female scalloped hammerhead, Sphyrna lewini, in northeastern Taiwan waters. Fish. Bull. 86: 389–393.

Chen, C.T., T.C. Leu and N.C.H. Lo. 1990. Age and growth of the scalloped hammerhead, Sphyrna lewini, in northeastern Taiwan waters. Pac. Sci. 44: 156–170.

Daly-Engel, T.S., K.D. Seraphin, K.N. Holland, J.P. Coffey, H.A. Nance, R.J. Toonen and B.W. Bowen. 2012. Global phylogeography with mixed-marker analysis reveals male-mediated dispersal in the endangered scalloped hammerhead shark (Sphyrna lewini). PLoS ONE. 7(1): e29986.
DOI: 10.1371/journal.pone.0029986View ArticleGoogle Scholar

Duncan, K.M., P. Martin, W. Bowen and H.G. De Couet. 2006. Global phylogeography of the scalloped hammerhead shark (Sphyrna lewini). Mol. Ecol. 15(8): 2239–2251.
DOI: 10.1111/j.1365-294X.2006.02933.xView ArticleGoogle Scholar

Freeland, J. 2005. Molecular ecology. John Wiley & Sons Ltd, England.

Glover, K.A., ?. Skaala, M. Limborg, C. Kvamme and E. Torstensen. 2011. Microsatellite DNA reveals population genetic differentiation among sprat (Sprattus sprattus) sampled throughout the Northeast Atlantic, including Norwegian fjords. ?ICES J. Mar. Sci. 68(10): 2145–2151.
DOI: 10.1093/icesjms/fsr153View ArticleGoogle Scholar

Hoyos-Padilla, E.M., J.T. Ketchum, A.P. Klimley and F. Galv?n-Maga?a. 2014. Ontogenetic migration of a female scalloped hammerhead shark Sphyrna lewini in the Gulf of California. Anim. Biotelemetry 2(1): 17.
DOI: 10.1186/2050-3385-2-17View ArticleGoogle Scholar

King, M. 2007. Fisheries biology, assessment and management, Second Edition. Blackwell Publishing Ltd, UK.
DOI: 10.1007/s11160-008-9090-1View ArticleGoogle Scholar

Klimley, A.P. 1983. Social organization of schools of the scalloped hammerhead shark, Sphyrna lewini (Griffith and Smith), in the Gulf of California. Ph. D. Dissertation, University of California San Diego.

Kordicheva, S.Y., G.A. Rubtsova, M.A. Shitova, G.O. Shaikhaev, K.I. Afanasiev and L.A. Zhivotovsky. 2010. A search for null alleles at the microsatellite locus of chum salmon (Oncorhynchus keta Walbaum). Russ. J. Genet. Appl. Res. 46(8): 1019–1022.
DOI: 10.1134/S1022795410080168View ArticleGoogle Scholar

Liu, K.M. and C.T. Chen. 1999. Demographic analysis of the scalloped hammerhead, Sphyrna lewini, in the northwestern Pacific. Fish. Sci. 65(2): 218–223.
DOI: 10.2331/fishsci.65.218View ArticleGoogle Scholar

Peakall, R. and P.E. Smouse. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics 28(19): 2537–2539.
DOI: 10.1093/bioinformatics/bts460View ArticleGoogle Scholar

Quattro, J.M., D.S. Stoner, W.B. Driggers, C.A. Anderson, K.A. Priede, E.C. Hoppmann, N.H. Campbell, K.M. Duncan and J.M. Grady. 2006. Genetic evidence of cryptic speciation within hammerhead sharks (Genus Sphyrna). Mar. Biol. 148(5): 1143–1155.
DOI: 10.1007/s00227-005-0151-xView ArticleGoogle Scholar

Quintanilla, S., A. G?mez, C. Mari?o-Ram?rez, C. Sorzano, S. Bessudo, G. Soler, J.E. Bernal and S. Caballero. 2015. Conservation genetics of the scalloped hammerhead shark in the Pacific coast of Colombia. J. Hered. 106(S1): 448–458.
DOI: 10.1093/jhered/esv050View ArticleGoogle Scholar

Rousset, F. 2008. Genepop’007: a complete reimplementation of the genepop software for Windows and Linux. Mol. Ecol. Resour. 8(1): 103–106.
DOI: 10.1111/j.1471-8286.2007.01931.xView ArticleGoogle Scholar

Takagi, M. 1999. PCR primers for microsatellite loci in tuna species of the genus Thunnus and its application for population genetic study. Fish. Sci. 65(4): 571–576.
DOI: 10.2331/fishsci.65.571View ArticleGoogle Scholar

Thiel, T. 2003. MISA - Microsatellite identification tool. Website http://misaweb.

Van Oosterhout, C., W.F. Hutchinson, D.P.M. Wills and P. Shipley. 2004. MICRO?CHECKER: Software for identifying and correcting genotyping errors in microsatellite data. Mol. Eco. Notes 4(3): 535–538.
DOI: 10.1111/j.1471-8286.2004.00684.xView ArticleGoogle Scholar