Note

First record of Goodyera × tamnaensis (Orchidaceae) from Boso Peninsula, Chiba Prefecture, Japan, based on morphological and molecular data

Kenji Suetsugu, Shun K. Hirota, Yoshihisa Suyama

Published on: 05 March 2021

Page: 113 - 120

DOI: 10.6165/tai.2021.66.113

PDF Download pdf | Appendix

2021 vol.66 no.1 pp.113-120

Abstract

References

Bolger, A.M., M. Lohse and B. Usadel. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30(15): 2114–2120.
DOI: 10.1093/bioinformatics/btu170View ArticleGoogle Scholar

Catchen, J., P.A. Hohenlohe, S. Bassham, A. Amores and W.A. Cresko. 2013. Stacks: an analysis tool set for population genomics. Mol. Ecol. 22(11): 3124–3140.
DOI: 10.1111/mec.12354View ArticleGoogle Scholar

Chen, X., K. Y. Lang, S. W. Gale, P. J. Cribb and P. Ormerod. 2009. Goodyera. In: Wu, Z. Y., P. H. Raven and D. Y. Hong (eds.), Flora of China, vol. 25, pp. 45–54. Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis.

Earl, D.A. and B.M. vonHoldt. 2012. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4(2): 359–361.
DOI: 10.1007/s12686-011-9548-7View ArticleGoogle Scholar

Evanno, G., S. Regnaut and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14(8): 2611–2620.
DOI: 10.1111/j.1365-294X.2005.02553.xView ArticleGoogle Scholar

Francis, R.M. 2017. POPHELPER: an R package and web app to analyse and visualize population structure. Mol. Ecol. Resour. 17(1): 27–32.
DOI: 10.1111/1755-0998.12509View ArticleGoogle Scholar

Guan, Q.X., G.Z. Chen, M.H. Li and S.P. Chen. 2014. Goodyera malipoensis (Cranichideae, Orchidaceae), a new species from China: Evidence from morphological and molecular analyses. Phytotaxa 186(1): 51–60.
DOI: 10.11646/phytotaxa.186.1.4View ArticleGoogle Scholar

Hu, C., H. Tian, H. Li, A. Hu, F. Xing, A. Bhattacharjee, T. Hsu, P. Kumar and S. Chung. 2016. Phylogenetic analysis of a ‘jewel orchid’ genus Goodyera (Orchidaceae) based on DNA sequence data from nuclear and plastid regions. PloS One 11(2): e0150366.
DOI: 10.1371/journal.pone.0150366View ArticleGoogle Scholar

Huson, D.H. and D. Bryant. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23(2): 254–267.
DOI: 10.1093/molbev/msj030View ArticleGoogle Scholar

Kallunki, J.A. 1976. Population studies in Goodyera (Orchidaceae) with emphasis on the hybrid origin of G. tesselata. Brittonia 28(1): 53–75.
DOI: 10.2307/2805559View ArticleGoogle Scholar

Kopelman, N.M., J. Mayzel, M. Jakobsson, N.A. Rosenberg and I. Mayrose. 2015. CLUMPAK: a program for identifying clustering modes and packaging population structure inferences across K. Mol. Ecol. Resour. 15(5): 1179–1191.
DOI: 10.1111/1755-0998.12387View ArticleGoogle Scholar

Lee, C.S., S. Kim, S.H. Yeau and N.S. Lee. 2012. Nuclear and cpDNA sequences demonstrate spontaneous hybridization between Goodyera schlechtendaliana Rchb. f. and G. velutina Maxim. (Orchidaceae) in Jeju Island, Korea. Syst. Bot. 37(2): 356–364.
DOI: 10.1600/036364412X635421View ArticleGoogle Scholar

Lee, C.S., S.H. Yeau, K.S. Lee and N.S. Lee. 2010. A new taxon of Goodyera (Orchidaceae): G. × tamnaensis. Korean J. Pl. Taxon. 40(4): 251–254.
DOI: 10.11110/kjpt.2010.40.4.251View ArticleGoogle Scholar

Nakahama, N., K. Suetsugu, A. Ito, M. Hino, T. Yukawa and Y. Isagi. 2019. Natural hybridization patterns between widespread Calanthe discolor (Orchidaceae) and insular Calanthe izu-insularis on the oceanic Izu Islands. Bot. J. Linn. Soc. 190(4): 436–449.
DOI: 10.1093/botlinnean/boz025View ArticleGoogle Scholar

Pace, M.C., G. Giraldo, J. Frericks, C.A. Lehnebach and K.M. Cameron. 2019. Illuminating the systematics of the Spiranthes sinensis species complex (Orchidaceae): ecological speciation with little morphological differentiation. Bot. J. Linn. Soc. 189(1): 36–62.
DOI: 10.1093/botlinnean/boy072View ArticleGoogle Scholar

Pritchard, J.K., M. Stephens and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945–959.

Rochette, N.C., A.G. Rivera-Col?n and J.M. Catchen. 2019. Stacks 2: Analytical methods for paired-end sequencing improve RADseq-based population genomics. Mol. Ecol. 28(21): 4737–4754.
DOI: 10.1111/mec.15253View ArticleGoogle Scholar

Shin, K., Y.K. Shin, J. Kim and K. Tae. 2002. Phylogeny of the genus Goodyera (Orchidaceae; Cranichideae) in Korea based on nuclear ribosomal DNA ITS region sequences. J. Plant Biol. 45(3): 182–187.
DOI: 10.1007/BF03030312View ArticleGoogle Scholar

So, J.-H. and N.-S. Lee. 2017. The origin of new natural hybrid, Goodyera × maximo-velutina (Orchidaceae) from Jeju Island, Korea. Phytotaxa 317(1): 61–68.
DOI: 10.11646/phytotaxa.317.1.6View ArticleGoogle Scholar

Suetsugu, K. and H. Hayakawa. 2019. A new variety of Goodyera schlechtendaliana (Orchidaceae) from Yakushima and Okinawa, Japan. Acta Phytotax. Geobot. 70: 49–55.

Suetsugu, K., T. Shitara, N. Nakato, K. Ishida and H. Hayakawa. 2019. First record of Goodyera × maximo-velutina (Orchidaceae) from Kozu Island, Japan. Taiwania 64(4): 347–352.
DOI: 10.6165/tai.2019.64.347View ArticleGoogle Scholar

Suyama, Y. and Y. Matsuki. 2015. MIG-seq: An effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform. Sci. Rep. 5(1): 16963.
DOI: 10.1038/srep16963View ArticleGoogle Scholar