Research Paper
Genetic structure of the rice leaf folder, Cnaphalocrocis medinalis (Lepidoptera: Crambidae) in Taiwan
Chia-Hung Hsieh, Tzu-Wei Guo, Kun-Yu Tu, Chung-Ta Liao, Wen-Po Chuang
Published on: 08 November 2023
Page: 451 - 457
DOI: 10.6165/tai.2023.68.451
Abstract
Cnaphalocrocis medinalis (Lepidoptera: Crambidae) is an economically important rice pest in Taiwan. The population genetic structure of C. medinalis is not clear and thus was studied in this research. Cnaphalocrocis medinalis samples were collected from six sampling locations in Taiwan using white sticky paper traps coated with sex pheromone. Genetic diversity was analyzed by mitochondrial and nuclear markers. Phylogenetic analysis revealed that all specimens of C. medinalis in Taiwan belonged to a single clade. Population genetic analysis of C. medinalis indicated no significant population structure because of a lack of significant genetic differentiation among the six sampling sites. Population genetic analysis also revealed no significant genetic differentiation among C. medinalis populations in Taiwan and neighboring regions, suggesting a common origin. The extremely low genetic diversity of C. medinalis in East Asia might be due to a population expansion after a recent founder effect. This study provides molecular information for understanding the population genetic structure of C. medinalis in Taiwan and East Asia.
Keyword: Molecular marker, pest, population genetics, rice, sex pheromone trap
Literature Cited
Doyle, J.J. 1987 A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11?15.
Excoffier, L., Lischer, H.E. 2010 Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under linux and windows. Mol. Ecol. Resour. 10(3): 564?564.
DOI: 10.1111/j.1755-0998.2010.02847.xView Article
Google Scholar
Folmer, O., Black, M., Hoen, W., Lutz, R., Vrijenhoek, R. 1994 DNA primers for amplification of mitochondrial cytochrome coxidase subunit I from diverse metozoan invertebrates. Mol. Mar. Biol. Biotechnol. 3: 294?299.
Fu, X.W., Li, C., Feng, H.Q., Liu, Z.F., Chapman, J.W., Reynolds, D.R., Wu, K.M. 2014 Seasonal migration of Cnaphalocrocis medinalis (Lepidoptera: Crambidae) over the bohai sea in northern china. Bull. Entomol. Res. 104(5): 601?609.
DOI: 10.1017/S0007485314000376View Article
Google Scholar
Fu, Y.X. 1997 Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147(2): 915?925.
DOI: 10.1093/genetics/147.2.915View Article
Google Scholar
Ganeswara Rao, A., Reddy, D.D.R., Krishnaiah, K., Beevor, P.S., Cork, A., Hall, D.R. 1995. Identification and field optimization of the female sex pheromone of the rice leaffolder, Cnaphalocrocis medinalis in India. Entomol. Exp. Appl. 74(3): 195?200.
DOI: 10.1111/j.1570-7458.1995.tb01891.xView Article
Google Scholar
Huang, S.-H., Cheng, C.-H., Wu, W.-J. 2010 Possible impacts of climate change on rice insect pests and management tactics in Taiwan. Crop, Environ. Bioinf. 7(4): 269?279. (In Chinese with English abstract)
DOI: 10.30061/CEB.201012.0006View Article
Google Scholar
Huelsenbeck, J.P., Ronquist, F. 2001. Mrbayes: Bayesian inference of phylogenetic trees. Bioinformatics 17(8): 754?755.
DOI: 10.1093/bioinformatics/17.8.754View Article
Google Scholar
Ji, Y.-J., Zhang, D.-X., He, L.-J. 2003 Evolutionary conservation and versatility of a new set of primers for amplifying the ribosomal internal transcribed spacer regions in insects and other invertebrates. Mol. Ecol. Notes 3(4): 581?585.
DOI: 10.1046/j.1471-8286.2003.00519.xView Article
Google Scholar
Kawazu, K., Hasegawa, J.-I., Honda, H., Ishikawa, Y., Wakamura, S., Sugie, H., Kamiwada, H., Kamimuro, T., Yoshiyasu, Y., Tatsuki, S. 2000. Geographical variation in female sex pheromones of the rice leaffolder moth, Cnaphalocrocis medinalis: Identification of pheromone components in japan. Entomol. Exp. Appl. 96(2): 103?109.
DOI: 10.1046/j.1570-7458.2000.00685.xView Article
Google Scholar
Kisimoto, R. 1984 Insect pests of the rice plant in Asia. Prot. Ecol.7: 83?104.
Kumar, S., Stecher, G., Tamura, K. 2016 Mega7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33(7): 1870?1874.
DOI: 10.1093/molbev/msw054View Article
Google Scholar
Lee, T.R.C., Anderson, S.J., Tran-Nguyen, L.T.T., Sallam, N., Le Ru, B.P., Conlong, D., Powell, K., Ward, A., Mitchell, A. 2019 Towards a global DNA barcode reference library for quarantine identifications of lepidopteran stemborers, with an emphasis on sugarcane pests. Sci Rep. 9(1): 7039.
DOI: 10.1038/s41598-019-42995-0View Article
Google Scholar
Liao, C.T., Hung, C.C. 2008 Field evaluation of synthetic pheromone blends of the rice leaffolder moth, Cnaphalocrocis medinalis (Lepidoptera: Crambidae). Bulletin of Taichung District Agricultural Research and Extension Station 101: 45?55. (In Chinese with English Abstract)
DOI: 10.6956/BTDAIS.200812.0045View Article
Google Scholar
Liao, C.T. 2010 The ecology and management techniques of Cnaphalocrocis medinalis. Taichung District Agricultural News 71: 18?19. (In Chinese)
Miyahara, Y., Wada, T., Kobayashi, M. 1981 Appearance of Cnaphalocrocis medinalis guenee in early planted rice fields in Chikugo. Jpn. J. Appl. Entomol. Zool. 25(1): 26?32.
DOI: 10.1303/jjaez.25.26View Article
Google Scholar
Padmavathi, C., Katti, G., Padmakumari, A.P., Voleti, S.R., Rao, L.V. Subba 2013a The effect of leaffolder Cnaphalocrocis medinalis (guenee) (Lepidoptera: Pyralidae) injury on the plant physiology and yield loss in rice. J. Appl. Entomol. 137(4): 249?256.
DOI: 10.1111/j.1439-0418.2012.01741.xView Article
Google Scholar
Padmavathi, C., Katti, G., Sailaja, V., Padmakumari, A.P., Jhansilakshmi, V., Prabhakar, M., Prasad, Y.G. 2013b. Temperature thresholds and thermal requirements for the development of the rice leaf folder, Cnaphalocrocis medinalis. J. Insect Sci. 13:96.
DOI: 10.1673/031.013.9601View Article
Google Scholar
Ramachandran, R., Caballero, P., Khan, Z.R. 1990 Pheromone components of rice leaffolders (LF) Cnaphalocrocis medinalis and Marasmia patnalis. Int. Rice Res. Notes. 15: 25?26.
Rogers, A.R., Harpending, H. 1992 Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9: 552?569.
DOI: 10.1093/oxfordjournals.molbev.a040727View Article
Google Scholar
Rozas, J., Ferrer-Mata, A., Sanchez-DelBarrio, J.C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S.E., Sanchez-Gracia, A. 2017 Dnasp 6: DNA sequence polymorphism analysis of large data sets. Mol. Biol. Evol. 34(12): 3299?3302.
DOI: 10.1093/molbev/msx248View Article
Google Scholar
Salzburger, W., Ewing, G.B., Von Haeseler, A. 2011 The performance of phylogenetic algorithms in estimating haplotype genealogies with migration. Mol. Ecol. 20(9): 1952?1963.
DOI: 10.1111/j.1365-294X.2011.05066.xView Article
Google Scholar
Slatkin, M., Hudson, R.R. 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129(2): 555?562.
DOI: 10.1093/genetics/129.2.555View Article
Google Scholar
Tajima, F. 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123(3): 585?595.
DOI: 10.1093/genetics/123.3.585View Article
Google Scholar
Wan, X., Li, J., Kim, M.J., Kang, T.H., Jin, B.R., Kim, I. 2011 Population genetic structure of the migratory rice leaf roller, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae), inferred from the mitochondrial A+T-rich region and nuclear its2 sequences. Genet. Mol. Res. 10(1): 273?294.
DOI: 10.4238/vol10-1gmr1005View Article
Google Scholar
Yang, Y., Wu, Z., Xu, H., Zheng, X., Lu, Z., 2017 Structural characterization and applications of ITS2 from rice leaffolders Cnaphalocrocis medinalis and Marasmia patnalis (Lepidoptera: Pyralidae). J. Asia-Pac. Entomol. 20(2): 313?318.
DOI: 10.1016/j.aspen.2016.12.017View Article
Google Scholar